Ravindra Taware, Khushman Taunk, T. V.Santosh Kumar, Jorge A. M. Pereira, José S. Câmara, H. A. Nagarajaram, Gopal Chandra Kundu, Srikanth Rapole (2020) Extracellular volatilomic alterations induced by hypoxia in breast cancer cells, Metabolomics .(InPress)
Trivedi, R., Nagarajaram, H.A.(2019) Amino acid substitution scoring matrices specific to intrinsically disordered regions in proteins, Scientific Report 9 , 16380 ,
doi:10.1038/s41598-019-52532-8.
Ramurthy Gudla, Guruprasad Varma Konduru, Hampapathalu Adimurty Nagarajaram, and Dayananda Siddavattam* (2019) Organophosphate hydrolase interacts with Ton components and targets membrane only in presence of ExbB/ExbD complex, FEBS Letters , 593,
581-593.
Ravindra Taware, Khushman Taunk, Jorge Pereira, Amey Shirolkar, Dharmesh Soneji , Jose Camara, H A Nagarajaram, Srikanth Rapole** (2018) Volatilomic insight of head and neck cancer via the effects observed on saliva metabolites , Scientific Reports , 8:17725 ,
DOI:10.1038/s-.
Khushman Taunk, RavindraTaware, Tushar H. More, Priscilla Porto-Figueira, Jorge Pereira, Rajkishore Mohapatra, Dharmesh Soneji , Jose Camara, H A Nagarajaram, Srikanth Rapole** (2018) ) A non-invasive approach to explore the discriminatory potential of the urinary volatome of invasive ductal carcinoma of the breast, RSC Advances , 8,
25040-25050.
Carina Cavaco, Jorge Pereira, Khushman Taunk, Ravindra Taware, Srikanth Rapole, Hampapathalu Nagarajaram and Jose Camara** (2018) Screening of salivary volatiles for putative breast cancer discrimination: An exploratory study involving geographic distant populations , Analytical and Bioanalytical Chemistry , ,
1-10.
Ravindra Taware, Khushman Taunk, Jorge A. M. Pereira, Rahul Dhakne, Narayanan Kannan, Dharmesh Soneji, Jose Camara, H A Nagarajaram, Srikanth Rapole** (2017) Investigation of urinary volatomic alterations in head and neck cancer: A non-invasive approach towards diagnosis and prognosis, Metabolomics , 13,
111(DOI 10.1007/s11306-017-1251-6).
Parveen Kumar, Prathyusha Munnangi, KVS Rammohan Chowdary, Varun Jayeshkumar Shah, Swapnil R Shinde, Nanci R Kolli, Rachita R Halehalli, Hampapathalu Adimurthy Nagarajaram, and Subbareddy Maddika(2017) A human tyrosine phosphatase interactome mapped by proteomic profiling, J. Proteome Res. , 16,
2789-2801.
Choudhary, R.K., Mandal, J.K., Auluck, N., Nagarajaram, H.A. (2016) Advanced Computing and Communication Technologies Proceedings of the 9th ICACCT ,2015 , Advances in Intelligent Systems and Computing , springer,
(Eds.)-.
Manjari Kiran and H.A.Nagarajaram(2016) Interaction and Localization Diversities of Global and Local Hubs in Human ProteinÂProtein Interaction Network, Molecular Biosystems , 12,
2875-2882.
A K Chaudhary, R Mohapatra, H A Nagarajaram, P Ranganath, A Dalal, A Dutta, S Danda, K Girisha, M D Bashyam (2015) The novel missense EDAR p.L397H mutation causes autosomal dominant hypohidrotic ectodermal dysplasia, Journal of european academy of dermatology and venearology .(InPress)
Radha Rama Devi A**, Ramesh V.A, Nagarajaram H.A, SatishS.P.S, Jayanthi U, Lokesh Lingappa (2015) Spectrum of Mutations in Glutaryl-CoA Dehydrogenase gene in GlutaricAciduria Type I - Study from South India , Brain & Development .(InPress)
Abdul Mueed Bidcho, Ashwin Dalal, Rakesh Trivedi, Anju Shukla, Sheela Nampoothiri, VH Sankar, Sumita Danda, Neerja Gupta, Madhulika Kabra, Shrikiran A Hebbar, Ramesh Y Bhat, Divya Matta, Alka V Ekbote (2015) Recurrent and novel GLB1 mutations in India , Gene .(InPress)
Rachita Halehalli and H.A.Nagarajaram(2015) Molecular principles of human virus protein-protein interactions , Bioinformatics , 31,
1025-1033.
Jorge Pereira, Priscilla Porto-Figueira, Carina Cavaco, Khushman Taunk, Srikanth Rapole, Rahul Dhakne, Hampapathalu Nagarajaram, Jose Camara(2014) Breath analysis as a potential and non-invasive frontier in disease diagnosis, Metabolites , 5,
3-55.
Murali D. Bashyam, Ajay K. Chaudhary, Manjari Kiran, Venkat Reddy, Hampapathalu A. Nagarajaram, Ashwin Dalal, Leena Bashyam, Deepti Suri, Anju Gupta, Neerja Gupta, Madhulika Kabra, Ratna Puri, RadhaRa(2014) Molecular analyses of novel ASAH1 mutations causing Farber lipogranulomatosis: analyses of exonic splicing enhancer inactivating mutation, Clin Genet , 86,
530-538.
Anupam Sinha and H.A.Nagarajaram(2014) Nodes occupying central positions in human tissue specific PPI networks are enriched with many splice variants, Proteomics , 14,
2242-2248.
Abdul Mueed Bidchol, Ashwin Dalal, Hitesh Shah, Suryanarayana S, Sheela Nampoothiri, Madhulika Kabra, Neerja Gupta, Sumita Danda, Kalpana Gowrishankar, Shubha R Phadke, Seema Kapoor, Mahesh Kamate, IC(2014) GALNS Mutations in Indian Patients with Mucopolysaccharidosis IVA , Am J Med Genet Part A , 164A,
2793-2801.
Siddaramappa J Patil, Gaurava Kumar Rai, Venkatraman Bhat, Vakkalagadda A Ramesh, H A Nagarajaram, Jyoti Matalia, Shubha R Phadke (2014) Distal Arthrogryposis Type 5D With A Novel ECEL1 Gene Mutation, Am J Med Genet Part A , ,
-.
Rachita Halehalli and H.A.Nagarajaram (2014) Viral Proteins that Bridge Unconnected Proteins and Components in Human PPI Network. , Molecular Biosystems , 10,
2448-2458.
Murali D. Bashyam, Ajay K. Chaudhary, Manjari Sinha, Hampapathalu A. Nagarajaram, Radha RamaDevi, Prajnya Ranganath, Ashwin Dalal, Leena Bashyam, Neerja Gupta, Madhulika Kabra Mamta Muranjan, Ratna D.(2014) Splice, insertion-deletion and nonsense mutations that perturb the Phenylalanine hydroxylase transcript cause Phenylketonuria in India. J Cell Biochem, , J Cell Biochem , 115,
566-574.
Anusha Uttarilli, Prajnya Ranganath, S. Jamal Md Nurul Jain1, Krishna Prasad, Anupam Sinha, Ishwar C Verma, Shubha R Phadke, Ratna D Puri, Sumita Danda, Mamta N Muranjan, Ganesh Jevalikar, H A Nagaraj(2014) Novel mutations of the ARSB gene in Indian patients with Mucopolysaccharidosis Type VI , Indian J. Med. Res. , 142,
414-425.
Mudunuri, S.B., Patnana, S. and Nagarajaram, H.A.(2014) MICdb3.0: A Comprehensive Resource of Microsatellite Repeats from Prokaryotic Genomes , Database , ,
-.
Manjari Kiran and H.A.Nagarajaram (2013) Global versus local hubs in human protein-protein interaction network , J.Proteome Res. , 12,
5436-5446.
Anupam Sinha and H.A.Nagarajaram(2013) Effect of Alternative Splicing on the Degree Centrality of nodes in PPI networks of Homo sapiens , J.Proteome Res. , 12,
1980-1988.
Vishal Acharya and H.A.Nagarajaram(2013) Response to: Statistical Analysis of Missense Mutation Classifiers, Human Mutat , 34,
407-.
Suresh B. Mudunuri, Priyatosh Mishra, and Nagarajaram, H.A.(2012) In Silico Survey of Distribution and Frequency of Imperfect Microsatellite Repeats in Viral Genomes. , Proceedings of IEEE International Conference on Data Science & Engineering (ICDSE 2012) , 1,
31-36.
Murali D Bashyam, Ajay K Chaudhary, Manjari Sinha, H A Nagarajaram, A Radha Rama Devi, Leena Bashyam, E Chandrakanth Reddy, Ashwin Dalal(2012) Molecular genetic analysis of MSUD from India reveals mutations causing altered protein truncation affecting the C-termini of E1-alpha and E1-beta., Journal of Cellular Biochemistry , 113,
3122-3132.
Murali Bashyam, Guroji Purushotham, Ajay K Chaudhary, Madhumohan Rao, Vishal Acharya, Tabrez Mohammad, H. A. Nagarajaram, Vuppaladadhiam Hariram, Calambur Narasimhan(2012) A low prevalence of MYH7/MYBPC3 mutations among Familial Hypertrophic Cardiomyopathy patients in India. , Mol Cell Biochem. , 360,
373-382.
M D Bashyam, A K Chaudhary, E C Reddy, V Reddy, V Acharya, H A Nagarajaram, A R R Devi, L Bashyam, A B Dalal, N Gupta, M Kabra, M Agarwal, S R Phadke, R Tainwala, R Kumar, S V Hariharan.(2012) A founder ectodysplasin A receptor (EDAR) founder mutation results in a high frequency of the autosomal recessive form of Hypohidrotic Ectodermal Dysplasia in India., Br J Dermatol. , 166,
819-829.
Pankaj Kumar and H.A.Nagarajaram(2012) A Study on Mutational Dynamics of Simple Sequence Repeats in Relation to Mismatch Repair System in Prokaryotic Genomes J. Mol. Evol., J. Mol. Evol. , 74,
127-139.
Suresh B. Mudunuri, Priyatosh Mishra and H.A. Nagarajaram(2012) "Distributional Analysis and Motif Frequencies of Compound Microsatellite Repeats in Viral Genomes.", Proceedings of IEEE International Conference on Computing, Electronics & Electrical Technologies (ICCEET) , 1,
887-893.
Vishal Acharya and H.A.Nagarajaram (2012) Hansa: An automated method for discriminating disease and neutral human nsSNPs , Hum Mutat , 33,
332-337.
Anupam Sinha and H.A.Nagarajaram (2011) Studies on Protein-Protein Interactions: A New Frontier in Computational Biology , Proceedings of 2nd International Conference on Metacomputing 15-16, Dec. 2011, Goa, India , ,
-.
Md. Tabrez Shamim and H A Nagarajaram(2011) A Hierarchical Approach to Protein Fold Recognition, J. Integr. Bioinform. , 8,
185-.
Md. Tabrez Shamim and H A Nagarajaram(2011) SVM-Based method for protein structural class prediction using secondary structural content and structural information of amino acids , J.Bioinform. Comput. Biol , 9,
489-502.
Pankaj Kumar, P. S. Chitanya and H A Nagarajaram (2011) PSSRdb: A Relational Database of Polymorphic Simple Sequence Repeats Extracted from Prokaryotic Genomes, Nucleic Acid Res. , 39(suppl1),
D601-D605.
Suresh B Mudunuri, Pankaj Kumar, Allam Appa Rao, S Pallamsetty and H A Nagarajaram (2010) G-IMEx: A comprehensive software tool for detection of microsatellites from genome sequences, Bioinformatics , 5,
221-223.
G Purushotham, K Madhumohan, Mohammad Anwaruddin,H.A Nagarajaram,Vuppaladadhiam Hariram,Calambur Narasimhan,Murali D Bashyam(2010) the MYH7 p.R787H mutation causes hypertrophic cardiomyopathy in two unrealted families., Exp clin Cardial , 15(1),
e1-e4.
Suresh, B.M, Rao, A.P, Mishra, P. and Nagarajaram, H.A. (2010) Comparative Analysis of Microsatellite Detecting Software: A Significant Variation in Results and Influence of Parameters., Proceedings of International Symposium on Biocomputing , ,
-.
Suresh B. Mudunuri, Allam Appa Rao, S Pallamsetty, Priyatosh Mishra and H.A.Nagarajaram (2009) VMD: Viral Microsatellite Database - A Comprehensive Resource for All Viral Microsatellites. , Journal of Computer Science and Systems Biology. , 22,
283-.
Korupolu, R.V., Achary, M.S., Aneesa, F., Sathish, K., Wasia, R., Sairam, M., Nagarajaram, H.A. and Singh, S.S. (2009) Profilin oligomerization and its effect on poly (l-proline) binding and phosphorylation, Int.J.Biol.Macromol. , 45,
265-273.
Achary, M.S. and Nagarajaram, H.A.(2009) Effects of Disease Causing Mutations on the Essential Motions in proteins., J. Biomol.Struct.Dyn. , 26,
609-624.
Achary, M.S. and Nagarajaram, H.A. (2008) Comparative docking studies of CYP1b1 and its PCG associated mutant forms. , J. Biosci. , 33,
699-713.
Md. Tabrez Anwar Shamim, Mohammad Anwaruddin and Nagarajaram, H.A.(2007) Support Vector Machine based classification of protein folds using the structural properties of amino acid residues and amino acid residue pairs. , Bioinformatics , 23,
3320-3327.
Suresh B. M. and Nagarajaram, H.A.(2007) IMEx: Imperfect Microsatellite Extractor. , Bioinformatics , 23,
1181-1187.
The NMITLI-BioSuite Team (Nagarajaram, H.A) (2007) BioSuite: A comprehensive bioinformatics software package (A unique industry academia collaboration) , Curr. Sci. , 92,
29-38.
Sreenu,V.B., Kumar, P., Nagaraju, J. and Nagarajaram, H.A.(2007) Simple sequence repeats in mycobacterial genomes, J.Biosci. (A peer-reviewed special issue on Computational Biology) , 32,
1-15.
M.S. Achary, A. B.M. Reddy, S. Chakrabarti, S.G. Panicker, A.K.Mandal, N.Ahmed, D. Balasubramanian, S.E. Hasnain, and Nagarajaram, H.A.(2006) Disease Causing Mutations in Proteins: Structural Analysis of the CYP1b1 Mutations Causing Primary Congenital Glaucoma in Humans , Biophysical J. , 91,
4329-4339.
Sreenu,V.B., Kumar, P., Nagaraju, J. and Nagarajaram, H.A.(2006) Microsatellite polymorphism across the M. tuberculosis and M. bovis genomes: Implications on genome evolution and plasticity. , BMC Genomics , 7,
78-88.
H.A.Nagarajaram, Prathima Iengar and Indira Ghosh (2005) In silico approach to antimalarial drug discovery: Design of selective inhibitor to Plasmodium falciparum aspartic proteases , Frontiers in Biophysics , ,
168-181.
Cheeran, A., Suganthan, R.B., Swapna, G., Bandey, I., Acharya, S., Nagarajaram, H.A. and Sen. R.(2005) E. coli RNA polymerase mutations located near the upstream edge of RNA:DNA hybrid and the beginning of the RNA exit channel are defective for transcription antitermination by N protein from lambdoid phage H-19B, J.Mol. Biol , 352,
28-43.
Prasad,M.D., Muthulakshmi,M., Arunkumar,K.P., Madhu,M., Sreenu,V.B., Pavithra,V., Bose,B., Nagarajaram, H.A., Mita,K., Shimada, T. and Nagaraju, J.(2005) SilkSatDb: A microsatellite database of the silkworm, Bombyx mori. , Nucleic Acids Research , 33,
D403-D406.
R.K.Gundu, B.Bose, S.Swamynathan, V.B.Sreenu, N.Pavan, S.Acharya and Nagarajaram, H.A (2005) Frontiers in Bioinformatics Research: The Biodiversity Issues ,, ,
-.
Ahmed Kamal, G. Ramesh, O. Srinivas, P. Ramulu, N. Laxman ,Tasneem Rehana, M.Deepak, M.S. Achary and Nagarajaram, H.A.(2004) Design, Synthesis, and Evaluation of Mixed Imine-Amine Pyrrolobenzodiazepine Dimers with Efficient DNA-Binding Affinity and Potent Cytotoxicity, Bio-organic & Medicinal Chemistry , 12,
5427-5436.
Buddhaditta Bose, Gyan Rajkumar, M. Narendar Pavan, A RadhaRama Devi, Nagarajaram, H.A.(2004) NBSdb: New Born Screening Database , Indian Journal of Medical Informatics , ,
-.
Sreenu, V.B., Ranjitkumar, G., Swaminathan, S., Priya, S., Bose, B., Narendra Pavan, M., Nagaraju, J., Nagarajaram, H.A.(2004) MICdb - Database of Prokaryotic Microsatellites. , Nucleic Acids Research , ,
-.
V.B.Sreenu, G.Ranjitkumar, S.Swaminathan, S.Priya, B.Bose, M.N.Pavan, Geetha Thanu, J.Nagaraju and Nagarajaram, H.A.(2003) MICAS: A fully automated web server for microsatellite extraction and analysis from prokaryote and viral genomic sequences. , Applied Bioinformatics , 2(3),
165-168.
G Ranjit Kumar, M Narendar Pavan, B. Bose, S Swaminathan, Geetha Thanu, P Prashanthi, B Phani Prasad, V B Sreenu, M Sridhar Achary and Nagarajaram, H.A (2003) EMBnet India Node (EIN) at the Centre for DNA Fingerprinting and Diagnostics: Serving the Indian sub-continent in Bioinformatics , Bioinformatics India , 12,
67-77.
V.B.Sreenu, Vishwanath Alevoor, J.Nagaraju and Nagarajaram, H.A(2003) MICdb: Database of Prokaryotic Microsatellites , Nucleic Acids Research , 31,
106-108.
Nagarajaram, H.A. and S.E.Hasnain(2003) Current Status of Post-Genomics Computational Biology , "Computing and Information Sciences : Recent Trends" , Editor: J.C.Misra,
Narosa Publishing House-New Delhi..
A.Kamal, N. Laxman, G. Ramesh, P. Ramulu, O. Srinivas, K. Neelima, A. K. Kondapi, V. B. Sreenu and Nagarajaram, H.A.(2002) Design, synthesis, and evaluation of new non-cross linking pyrrolobenzodiazepine dimers with efficient DNA-binding ability and potent antitumour activity , J. Med. Chem , 45,
4679-4688.
E.Narayanan, Nagarajaram, H.A., C. Ramakrishnan and N.Srinivasan(2002) Influence of solvent molecules on the stereochemical code of glycine residue, PROTEINS , 49,
326-334.
S.G.Panicker, A.B.M.Reddy, A.K.Mandal,N.Ahmed, Nagarajaram, H.A., S.E.Hasnain and D.B. Balasubramanian (2002) Identification of novel mutations causing familial primary congenital glaucoma in indian pedigrees , Investigative Ophthalmology & Visual Science , 43,
1358-1366.
J. Mendes, Nagarajaram, H.A., Claudio M. Soares, Tom L. Blundell, Maria Armenia Carrondo(2001) Incorporating knowledge-based biases into an energy-based side-chain modeling method: application to comparative modeling of protein structure , Biopolymers , 59:2,
72-86.
N. Campillo, Nagarajaram, H.A. & I. Ghosh(2001) Phosphoribosyltransferase superfamily: A comparative structural analysis, J.Mol.Model , 7,
80-89.
D.F.Burke, C.Dean, Nagarajaram, H.A., Tom L.Blundell and K.Mizuguchi(1999) An iterative structure-assisted approach to sequence alignment and comparative modeling, PROTEINS , 3,
55-60.
Nagarajaram, H.A., B.V.B.Reddy and Tom L. Blundell(1999) Analysis and prediction of inter-strand packing distances between beta-sheets of globular proteins., Protein Eng , 12,
1055-1062.
B.V.B.Reddy, Nagarajaram, H.A. and Tom L. Blundell(1999) Analysis of interactive packing of secondary structural elements in alpha/beta units in proteins, Protein Sci. , 8,
573-586.
R.Sowdhamini, D.F.Burke, Jing-Fei Huang, K.Mizuguchi, Nagarajaram, H.A., N.Srinivasan, R.E.Stewart and Tom L. Blundell(1998) CAMPASS: A database of structurally aligned protein superfamilies, Structure , 6,
1087-1094.
R.Sowdhamini, D. F. Burke, C. Deane, Jing-Fei Huang, K.Mizuguchi, Nagarajaram, H.A., J.P.Overington, N.Srinivasan, R.E.Steward and Tom L.Blundell(1998) Protein 3D structural databases: Domains, structurally aligned homologues and superfamilies , Acta Crystallogr. , D-54,
1168-1177.
K.Gunasekaran, Nagarajaram, H.A., C. Ramakrishnan and P. Balaram(1998) Stereochemical punctuation marks in protein structures: Glycine and Proline containing helix stop signals, J.Mol.Biol. , 275,
917-932.
Nagarajaram, H.A., B.V.B.Reddy and T.L.Blundell(1997) Packing of secondary structural elements in proteins , Prot. Sci. , 6,
pp-87.
R.Sowdhamini, N.Srinivasan, S.Rufino, Nagarajaram, H.A., K.Mizuguchi, D.F.Burke, K.Guruprasad, R.Stewart and T.L.Blundell(1997) Protein domains, superfamilies and functions, Prot. Sci. , 6,
pp-75.
R.Sowdhamini, N.Srinivasan, S.Rufino, Nagarajaram, H.A., K.Mizuguchi, D.F.Burke, K.Guruprasad, R.Stewart and T.L.Blundell(1996) Protein domains, superfamilies and functions , Fold. Des. , 1(supplement),
pp.- S59.
R.Varadarajan, Nagarajaram, H.A. and C. Ramakrishnan(1996) A procedure for the prediction of temperature-sensitive mutants of a globular protein based solely on the amino acid sequence., Proc. Natl. Acad. Sci. (USA) , 93,
13908-13913.
Nagarajaram, H.A. and C. Ramakrishnan(1995) Stereochemical studies on cyclic peptides - Detailed energy minimisation studies on hydrogen bonded all-trans cyclic pentapeptide backbones ., J.Bioscience , 20,
591-611.
Nagarajaram, H.A., P.K.Paul, K. Ramanarayanan, K.V.Soman and C. Ramakrishnan(1992) Conformational studies on beta-bends containing a cis peptide unit, Int. J. Peptides Proteins Res. , 40,
383-394.
Nagarajaram, H.A. and C. Ramakrishnan (1991) Stereochemical studies on cyclic peptides - Detailed energy minimisation studies on hydrogen bonded all-trans cyclic pentapeptide backbones, Indian J. Phys. , 65B,
449-454.
Nagarajaram, H.A. and C. Ramakrishnan (1991) Energy minimisation studies on cyclic pentapeptides, Indian J. Phys. , 65,
449-454.